fix: v2.3.1 — correct version, say why a plugin update failed, gitignored files in Files

- v2.3.0's tree reported 2.2.1, so every install saw an update forever;
  package.json, the lockfile, openapi.yaml, the CLAUDE.md marker and the
  snapshot now read 2.3.1
- A failed plugin-update step records the tail of the command's stdout and
  stderr plus its exit code or signal (failureText); plugin-bootstrap.js
  prints its refusal on stdout, which the verdict used to drop. Update all
  uses the same text
- updates.test.js never applies an update: it skips when the checkout is
  behind a release (apply ran npm run setup and pruned dev dependencies)
- Files tree lists gitignored files and folders, named in orange
  (addIgnored in git-diff.js); change-tree rows indent in whole steps

openapi.yaml

@@ -3,7 +3,7 @@
 openapi: 3.0.3
 info:
   title: Agent Dashboard for Claude Code API
-  version: 2.2.1
+  version: 2.3.1
   description: HTTP API for real-time Claude Code session monitoring, agent lifecycle tracking, analytics, pricing, hooks ingestion, and workflow intelligence.
   contact:
     name: Nguyễn Ngọc Trí Vĩ